rs37005406 SNP Detail

Summary

• ID
  rs37005406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113813919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACAGTGA GCCATGGCAG
  CCCACAGTGA GTGATAGCAG CCCTGGCTGG GCAGAGCATT GCTGGATGGT CATCAGGGCC
  TCCTTATCCT GCTGAAATCA CCCAGGAGCT TTCTGGTCAG CTGCAGGGTG GCCCCTTTTT
  GAACTGCTTT CTGCTTTCCT TTGTACCCCC TGGCTGGCCT GCAGAGCCGT GTACCCAGTA
  Y
  ACTCCTCAGC ACGCACTAAT GGGTCCTGGC TTTATTCTGT TGATGATTCA TATGCCGTGT
  GGGTGCTGCT CTGTAGGGCT GCCCCATTGA CTCAGGCATC AGGATCAGCC CACTTTTAAA
  GGACTTTTCT CCATGGTGGG GGTGAGAGTG TCTCAGGGAG GGTGTGTATG CATTCCAAAG
  CAAAAAGCAG GCTTAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51837677	NES14763282	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	C		C
ss321912046	CHEV_6_113786952	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37005406					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51837677	NES14763282	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113813919 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp2b2	ATPase, Ca++ transporting, plasma membrane 2			Intron
				Noncoding-Transcript-Variant
Rr636604	regulatory region 636604			1553 bp proximal
Rr636605	regulatory region 636605			1728 bp proximal