rs37002427 SNP Detail

Summary

• ID
  rs37002427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:105348042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGATGGC ACAGGTTAGT
  TGGCGGGTTC GGAACATGCA GAGGAAGTCA CAGGAATGGT AGCAATGATA GTCATTTCAT
  TCGCTTTTAT AAACATGCAT ATCAAAAGTG CTCATCACAA TTCTAGCAAC AAAATCCATT
  CAGATTTGTC TTCAGTGCCA GCTGAGATTC CTTACAGACA CGGACCTGCA GCTACAGGCT
  Y
  TTCACTACTC AAACTGAGAA CTTTTGCCAA CCGTCCAAGC CACCTGGTGA AATAATACTG
  AAACTAAAAC ATCCCTGCTC CTGCTAAGAC ATGGGTTTCT GAACTGAAAT TATCAATATT
  TTCAGGACAA AATAATTTCC TAAGATGTTT AAGTAACTAT TCTTTAAAAC AACAAATAAT
  AATTAATTCA CAATTCTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50792613	NES14216533	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37002427					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50792613	NES14216533	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:105348042 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp2c1	ATPase, Ca++-sequestering			Intron
				Noncoding-Transcript-Variant
Gm19667	predicted gene, 19667			within coordinates
Tssr86838	transcription start site region 86838			344 bp downstream
Tssr86839	transcription start site region 86839			318 bp downstream
Tssr86840	transcription start site region 86840			303 bp downstream