rs37002340 SNP Detail

Summary

• ID
  rs37002340
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128128456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCGCTG CTCTACGGTG
  TGCTTGTGGT ACAACTTGTG GGAAACGAAT GTGAGGACCT GCACTGTGGC CGTTCTCTAA
  CGGCGCATCA GAACAGTCCA GGAAGGGGTT AATAATAACT GGGACAGGGG ACAGCAGTGC
  CATGCCCAGC CTCAAAGGCG GCACGAGCCA ACCAAGAACC AAGGAGGCAG ACAAAGAAGA
  K
  ACACACAGGA GCAGAAGCTC AAGGAGCCAG AAGCAAAAGT CGTGAGAAAA AGGTGCCCGG
  CCAACAGGTG AAATTAAGAA ATTCAGCAAA ACCAAGGCAC AACAGCATAG TGGGACCAAG
  AGAATGGCAC TGCTTCTTTC TGCTCCTTTG TAAGTCCCTG GTTCTCTGCT GTACCATCTC
  TCACCAAGCT CTGAATAGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50948043	NES14141712	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	G	T	G	T	T	T	T	T	T	T	T
ss147739309	ENSMUSSNP1658618	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37002340					SNP	G	G	G	T	G	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50948043	NES14141712	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128128456 () rs orientation: forward

Symbol	Name	Function Class
Stat2	signal transducer and activator of transcription 2	mRNA-UTR
Tssr96388	transcription start site region 96388	88 bp downstream