rs36997181 SNP Detail

Summary

• ID
  rs36997181
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143913262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAAAACA AAAACCAGCA
  CACATATCAT ACAGAATCAT GGTGAGTTGT GGTATTTCCT AAAGTATGAA CATGAAAATG
  AATATGTAAT TCTAAAATGA AATGTTGTAA ATTAAGGGGG AATGTGCTCA GGTATCACTA
  AATGACTCTC TAAGGGTCTG GGTGGTCTTT GTGGAGGGAA GGAAAGGGGA AGGGTCGGAA
  R
  GATGGGACTT TGAACTTTTG TCTCCAGGCT ACCCCGGGGC CTAAACTTTT AGAGGTGGTT
  TTAGTGTTTT GATTCGGATT GTGTGTGAAG TCTGCACACA CACTCCAGTA AAGTGGAATG
  GGCGGGGATA TATTACCAGA AATCTTGCTT CACTGTGGTT ACAGAAGCTC AAAGGTTGTA
  GAGGCTAACA TCTTTGAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51655508	NES14643417	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	G	A	A	A	G	A	A
ss136029283	ENSMUSSNP2215012	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36997181					SNP	G	A	A	A	G	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51655508	NES14643417	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143913262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13895	CpG island 13895	1541 bp distal
Rr398096	regulatory region 398096	1721 bp downstream
Rr586602	regulatory region 586602	1791 bp distal
Rr586603	regulatory region 586603	within coordinates
Tssr35972	transcription start site region 35972	1971 bp upstream
Tssr35973	transcription start site region 35973	1516 bp upstream