rs36996850 SNP Detail

Summary

• ID
  rs36996850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112184440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTAAAAG AGGACATTAA
  TAAGAATCAG TTAGGATATG GTGGGCTCCA GTCGTGTGGT GGCTGTTCAA ATTCAGAAGA
  CGGTACCTGG GACGGGGTAG AGGAAAGGAG ACAGAAACAG AACTGGGGCT TTGTCATCCA
  CTATCTCATA TAACCACTAG ATGGCACCAA ACACAAACCA TGCTGTATTC CAAGAGAGCA
  R
  GCCAGGTTAA CCTTGATGCT AAAGAATTTC TGTACTGAGC TCTGGAAGAG TCTTTAAACT
  ACGGTACGTA CAAGTGACTC TAGCCCAAGC AGAGATGGCT GTTTGGATGT CACTAAATCA
  AAAGTATTTT GTATTTAATG CTAAAAAAGG ATATCAAAAA GAAGCACTTA GGAGATGATG
  GGTTCCAGTC ACGGGGTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51832935	NES14763460	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36996850					SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51832935	NES14763460	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112184440 () rs orientation: forward

Symbol	Name	Function Class
Gm66265	predicted gene, 66265	627 bp upstream
Rr636305	regulatory region 636305	within coordinates
Rr636306	regulatory region 636306	30 bp distal
Rr636307	regulatory region 636307	1429 bp proximal
Rr636308	regulatory region 636308	1481 bp proximal