rs36996648 SNP Detail

Summary

• ID
  rs36996648
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82938273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCAACTA CCAGGAACTC
  AATTATTTCA ATAGACATAA TTCCTTTCTC TGTCTTCCTT TCTTTAGGTG GATATTGATA
  TCAAGATCCG CTCTTGCAAA GGGTCCTGCA GCAGGGCTGT AAACCGTGAG ATAAATCTAC
  AGGACTATGA AGGTCACCAA AAACAGCTTC AACAGGTCAT CGCTAAAGAA TTGCTTCCTA
  S
  AAAAGACAGG CAGTACTTGC CAGCACTAAA AATGTCTCCA GTTCCCGACT TGGTTCCCGG
  AAGTTTTAAG AGCCAGCTTC AGGAGGCCCC TCCAGAGTGG AAGGCATTAA CAGAAATGCG
  GCAGATGAGA ATGGAGCTGG AGAGACCTGG GAAGGATGGG GGTTCGCGAG GAGATTCACC
  AGGAGACTCG CGGGGAGATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50990080	NES13925797	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36996648					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990080	NES13925797	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82938273 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Coding-NonSynonymous
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	732 bp upstream
Tssr29664	transcription start site region 29664	1869 bp downstream
Tssr29665	transcription start site region 29665	1830 bp downstream
Tssr29666	transcription start site region 29666	1794 bp downstream
Tssr29667	transcription start site region 29667	1751 bp downstream
Tssr29668	transcription start site region 29668	757 bp downstream
Tssr29669	transcription start site region 29669	707 bp downstream
Tssr29670	transcription start site region 29670	670 bp downstream
Tssr29671	transcription start site region 29671	121 bp downstream
Tssr29672	transcription start site region 29672	28 bp downstream
Tssr29673	transcription start site region 29673	within coordinates
Tssr29674	transcription start site region 29674	44 bp upstream
Tssr29675	transcription start site region 29675	54 bp upstream
Tssr29676	transcription start site region 29676	64 bp upstream
Tssr29677	transcription start site region 29677	81 bp upstream
Tssr29678	transcription start site region 29678	160 bp upstream
Tssr29679	transcription start site region 29679	204 bp upstream
Tssr29680	transcription start site region 29680	227 bp upstream
Tssr29681	transcription start site region 29681	329 bp upstream
Tssr29682	transcription start site region 29682	352 bp upstream
Tssr29683	transcription start site region 29683	395 bp upstream
Tssr29684	transcription start site region 29684	420 bp upstream
Tssr29685	transcription start site region 29685	461 bp upstream
Tssr29686	transcription start site region 29686	527 bp upstream
Tssr29687	transcription start site region 29687	625 bp upstream
Tssr29688	transcription start site region 29688	649 bp upstream
Tssr29689	transcription start site region 29689	675 bp upstream
Tssr29690	transcription start site region 29690	705 bp upstream
Tssr29691	transcription start site region 29691	751 bp upstream
Tssr29692	transcription start site region 29692	767 bp upstream
Tssr29693	transcription start site region 29693	798 bp upstream
Tssr29694	transcription start site region 29694	831 bp upstream
Tssr29695	transcription start site region 29695	857 bp upstream
Tssr29696	transcription start site region 29696	870 bp upstream
Tssr29697	transcription start site region 29697	894 bp upstream
Tssr29698	transcription start site region 29698	1031 bp upstream
Tssr29699	transcription start site region 29699	1113 bp upstream
Tssr29700	transcription start site region 29700	1126 bp upstream
Tssr29701	transcription start site region 29701	1158 bp upstream
Tssr33800	transcription start site region 33800	136 bp downstream
Tssr33801	transcription start site region 33801	481 bp downstream
Tssr33802	transcription start site region 33802	617 bp downstream