rs36996096 SNP Detail

Summary

• ID
  rs36996096
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143946750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGAAGG GTCACCATCT
  TGCTGACTTC ATGTCCCGTT TTTTCAGGAG AGGGATCTTG GTGTGTCTTC TCCACCTGCA
  GCCTGCTTAC CCAGCAGCAT GAGGCAAGAT GTTCAGACAA TTAACCATTA GAATTCCATT
  TCCATCTCAG ATATACTTTA CCTGTGGCGC ATCCTGGGAG TTGCTTAGGT GAAGCTGGCA
  R
  CACAACTAGA CTCTAGTCAC AGCCTCGGTT TTGGAGTCTA CTGGCCAGGG TTTCATGAAC
  TCCGATTAAT TAATAAGTGG GACATGGAGA CGTAAAACTT GTCAGCAGAG GGGCAGGGGA
  CAAGCCAGGA TTTGGAGACT AGACAGGAGC TTCCCACAGC AGTGTCCTTG CTGAATGCTA
  ACCTTCCGCA CTTTCCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51654959	NES14643019	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36996096					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51654959	NES14643019	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143946750 () rs orientation: forward

Symbol	Name	Function Class
Rr398097	regulatory region 398097	1117 bp upstream
Rr586608	regulatory region 586608	965 bp proximal
Rr586609	regulatory region 586609	972 bp proximal
Rr586610	regulatory region 586610	1233 bp proximal