rs3699583 SNP Detail

Summary

• ID
  rs3699583
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17629090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACACGCCT TCCACTGAGC
  TACATCCATC TCCAGAGAAA ACTCTTAAAA AACGAAGCCA AAATATGACT GAGGCTATAA
  ATAATCTCTC TCAGATGCTC AAGCAAACTC TCATTTTAGT TATTATGTTC TGAACATCTT
  ACCATCTTCA TTCTGCCTCT TGGATATAAG TCTCAACACC CCTCTACCTA CTTGGGGATG
  R
  CTTTGCAGGT CCCTAGGATT TGCATGAACT AGGGTTAAAG ATACCTGGAT GCTCAAAATT
  CTGTTTAAAC TGGTGCAAGG CCTTTCTGGA ACCCCAAGTC TCGCCTGTAA TTTTGCTTGC
  TCAGCCTGGG AACTCCAGTT TCCCTTTTGT GTGGGCTCCA GAGCGGGGGA GGGAAACACA
  ACACTTCCCT CTTTCTGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5075770	WI_WGS_6_17497798	WI	MOUSE	f	SNP	A			G
ss133019246	ENSMUSSNP5514405	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3699583					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17629090 () rs orientation: forward

Symbol	Name	Function Class
Rr626820	regulatory region 626820	within coordinates
Rr626821	regulatory region 626821	718 bp proximal