rs36994266 SNP Detail

Summary

• ID
  rs36994266
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72622810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGGGCAC AATGCTGAAC
  TCATTACAGC ACACCAGCTC ATTTCTGCAC AACTCTATGA TGTCAGTGCT CCTCTAATCC
  CCATTTAATA GATGAGGAAA CTGAGGCAGA GAGATGACGT AATTTGCCCA AAGCTTTGAG
  AAGAGAGGGA AGCAAAGCCG GGATCAGAAC CTGCAGGTTT CCACGGCAAC CATGACCAGC
  R
  CATCTCAAGG CAGCGCCCTC CTCTCTGTTC TTGGGAGTTT GGATAAGCTG CTGTACTCTA
  GGTTGGTATT ATTTCCCCTT GGGCGTTATT GAAATTCTTT ATTTTATTTT ATTTTATTTG
  GATTTTCAAG ACAGGGTTTC TCTGTGTAGC CCTGGCTGTC CTGGAACTCA CTCTGTAGAC
  CAGGCTGGCC TCGAACTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51694818	NES14819007	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36994266					SNP	A	A	A	A	A	G	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51694818	NES14819007	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72622810 () rs orientation: forward

Symbol	Name	Function Class
Gm38114	predicted gene, 38114	1742 bp upstream
Rr632258	regulatory region 632258	within coordinates
Rr632259	regulatory region 632259	1400 bp proximal
Rr632260	regulatory region 632260	1660 bp proximal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	Intron