rs3699389 SNP Detail

Summary

• ID
  rs3699389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:128062073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGGAAAA AAAAAAAAGA
  GTGCCACACT ATTTGGAAAG GAATACAGAC GCTGAGTCAT CACTCTGCAT GGGAGGGGGG
  GCCGGCGGAG GGGGGTAGGA AACGCCAATT AAGCGGTTGG AAGATGCGAT TCATTCATTA
  GATTGGGCTT CAGGTGAAAC CCGACAGCTA TACCGCGAAA AATAGCACTC AAAAGACAGG
  Y
  AACAAATAGC GGGAGCAGTC ATCCTTTTAT CCAACTCCGA TGGTCCGGAC GCACAAACGG
  ATTAGGAAGC GGCATCACTA ACTGAGCGAA AGGAGTTTAA CTGGTTGTCA GGTTGGCGCA
  GTAAGCGCTC AAAGTAAACT TCGTTATCCA AGGGACAGAG GTGGTGCACG GTGGCGAAAA
  GCAATCACTT TGGCACTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5075576	WI_WGS_7_118331004	WI	MOUSE	f	SNP	C						T
ss46002887	mCV24293234	ABI	CRAMUS_MOUSE	f	SNP		C	T				T
ss61060900	NES16065827	PERLEGEN	MM_PANEL2	f	SNP	C			T	C	T		C	C	C	T	C	C
ss145891472	ENSMUSSNP191967	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3699389					SNP	C	C	T	T	C	T	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61060900	NES16065827	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128062073 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19791	CpG island 19791			within coordinates
Gm32816	predicted gene, 32816			1459 bp upstream
Rr368466	regulatory region 368466			1248 bp upstream
Rr656040	regulatory region 656040			146 bp distal
Rr656041	regulatory region 656041			113 bp proximal
Rr656042	regulatory region 656042			850 bp proximal
Rr656043	regulatory region 656043			1741 bp proximal
Rr656044	regulatory region 656044			1977 bp proximal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1			Intron
				Noncoding-Transcript-Variant
Tssr2414	transcription start site region 2414			843 bp downstream
Tssr69425	transcription start site region 69425			1588 bp upstream
Tssr75109	transcription start site region 75109			623 bp upstream
Tssr75110	transcription start site region 75110			819 bp downstream
Tssr75111	transcription start site region 75111			964 bp downstream
Tssr75112	transcription start site region 75112			978 bp downstream
Tssr75113	transcription start site region 75113			1040 bp downstream
Tssr75114	transcription start site region 75114			1200 bp downstream
Tssr75115	transcription start site region 75115			1230 bp downstream
Tssr75116	transcription start site region 75116			1281 bp downstream