rs3699331 SNP Detail

Summary

• ID
  rs3699331
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36119208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC CTCAACATAA GATTCATTTT
  W
  AAAAAAACAA ACAAGGGCTG GAAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5075518	WI_WGS_3_35932901	WI	MOUSE	f	SNP	T			A
ss45435507	mCV22322133	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
ss134777616	ENSMUSSNP312149	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3699331					SNP	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36119208 () rs orientation: forward

Symbol	Name	Function Class
Acad9	acyl-Coenzyme A dehydrogenase family, member 9	920 bp upstream
Cpgi13079	CpG island 13079	809 bp proximal
Rr397642	regulatory region 397642	212 bp downstream
Rr575304	regulatory region 575304	within coordinates
Rr575305	regulatory region 575305	122 bp proximal
Rr575306	regulatory region 575306	302 bp proximal
Rr575307	regulatory region 575307	430 bp proximal
Tssr28859	transcription start site region 28859	925 bp upstream
Tssr28860	transcription start site region 28860	987 bp upstream
Tssr28861	transcription start site region 28861	1005 bp upstream
Tssr28862	transcription start site region 28862	1052 bp upstream