rs36990460 SNP Detail

Summary

• ID
  rs36990460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152179169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATGTGTA TGTTGTTCCC
  GATGTAAAGC TCTCCCTGAC CTACAGAAGC AAAGCTGACA ATTCTCCTTC ATACCAGCAG
  CGTGTCTTAT TCCAGCTACC AGGAACACCC TGGGCTGGGT GAGCGTTACA TGGAGTTGGG
  GAGCATGGTG GCAAGCAGGA GTCAGGCTGT TAGGGTGAGA TTCTGGTGTA ACAGAGTTTC
  R
  AAACCGACTT CAATAATCCC TTGCCACCTT CTGCTTGCAC ACTGTTCTTC CACTGCGACA
  GTGATCTCCG CCTTCCGCAG CTCCCTAATT CTTGAGAGAT GGATGTAGTG GGAATGGGAC
  TTCATGCCTT TAGAGACGAG GTTAGAGCCT CTTAAGCTTT TCCCACTTGT GAGACCCCAT
  CTTGCCTGAG TAATAGCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51675401	NES14642844	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36990460					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51675401	NES14642844	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152179169 () rs orientation: forward

Symbol	Name	Function Class
Ak5	adenylate kinase 5	Intron
Rr587559	regulatory region 587559	1012 bp proximal
Rr587560	regulatory region 587560	1266 bp proximal
Rr587561	regulatory region 587561	1870 bp proximal