rs3698867 SNP Detail

Summary

• ID
  rs3698867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:89325077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTG CAAAGCAGCT GGGCAACTGG
  Y
  GAACATGGGA AGGCATGGAC TGGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5075051	WI_WGS_6_90198294	WI	MOUSE	f	SNP	C			T
ss133371929	ENSMUSSNP5463831	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss321851980	CHEV_6_89298089	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3698867					SNP	C	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89325077 () rs orientation: forward

Symbol	Name	Function Class
Gm44207	predicted gene, 44207	1532 bp downstream
Plxna1	plexin A1	Intron
Rr634109	regulatory region 634109	1838 bp distal
Rr634110	regulatory region 634110	15 bp distal
Rr634111	regulatory region 634111	385 bp proximal
Rr634112	regulatory region 634112	1986 bp proximal
Tssr62006	transcription start site region 62006	485 bp downstream