rs3698313 SNP Detail

Summary

• ID
  rs3698313
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17628842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTAATGT TACTTAGTTA
  TAAGTCAGAA CCTGACTATT TCTTTCCTCT ACATCTCTTT ACATCTTCAT GCCCCTGGCC
  CTGTCAATCA ATTGGCTGCT TCAATTATTT GTTAGGCCTC AACTCTACTA CTCAACTAGT
  AAAACTAGTC TCCAGAAGGG CTTTATTTCC CTAGAATCCC AAAGCTGTGT CTTCCCCCTC
  R
  TTCCTTATTT ACTTCTGAAG TTGAACTCAG GACGTTATGC ATGCCAAGCA CACGCCTTCC
  ACTGAGCTAC ATCCATCTCC AGAGAAAACT CTTAAAAAAC GAAGCCAAAA TATGACTGAG
  GCTATAAATA ATCTCTCTCA GATGCTCAAG CAAACTCTCA TTTTAGTTAT TATGTTCTGA
  ACATCTTACC ATCTTCATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5074488	WI_WGS_6_17497550	WI	MOUSE	f	SNP	G			A
ss45915678	mCV23971772	ABI	CRAMUS_MOUSE	f	SNP		G	A	A	A
ss133019243	ENSMUSSNP4100212	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3698313					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17628842 () rs orientation: forward

Symbol	Name	Function Class
Rr626820	regulatory region 626820	206 bp proximal
Rr626821	regulatory region 626821	966 bp proximal