rs36981895 SNP Detail

Summary

• ID
  rs36981895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97715942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATCCTTT CCCATACAAC
  AGGCCAACTC TGAGTCCCAC TGCAATGACT CCATCACCCA GCTCTTCTCA CTGTCTCCAC
  AGTTTCATTT GCTGCTGCCC AGCCTCGAAT GAGCCTGCAG ATCCATGAGC CACGAGTCCC
  TCAAGGGTTA ATAAGGCCAC AGTGCCTTTC TAGACCTCTG TACTCTGCAT CTTCCTCACC
  Y
  TGCTGTCCTT GCTCTGCAGC AGAGGTCATC TGAGTCTTTT CAGAAACTTG TGGCACATTT
  ATCCCCATGT CCTCAGGCAG GGTGCCAGGT CTGGGGAGGC AGAGTCCTCG ATTTCCTACT
  CCTCCTTACT CTCTGCCTGA TATGGTTGCT GAGTGAAATG GCATCGTTTT ATGACATGCA
  TGTACATTGG ATATGCAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss51376261	NES13728275	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs36981895					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51376261	NES13728275	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97715942 () rs orientation: forward

Symbol	Name	Function Class
Rr399782	regulatory region 399782	1231 bp upstream
Rr635214	regulatory region 635214	1100 bp proximal
Rr635215	regulatory region 635215	1327 bp proximal
Rr635216	regulatory region 635216	1616 bp proximal