rs36981497 SNP Detail

Summary

• ID
  rs36981497
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:25034155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGCTGG TGCTGTGGTT
  TAAAAAGGGG TAACACTCCC TTTATAGATC TGACTCATCG TTTCATTACC TGGTGGACAT
  TTCAACAACA TTGTTCTTGC TTAAGTAGAC TCTTATCAAC GTTCACTTCT TCAGACACCT
  ACTCTGATGG GGAAGATGTC CACAAAGAAC AAACTAAAAG CATCTAACCA TGAAATTTTT
  S
  TCTAGCTTTT GCCAGACAAC TTTTAAATGC TGTCAAAATT CACCTTCTTT ATAGTAGGAG
  GAGGTAGGAA TCTACAAGAA CCTAATGTTT TAAGTTAGAA AGCAAAGGTG ACTGATAAAG
  GCTAATAAGC AGGTATAAAC CTAAATATTT ATTTAATAAG CATTTTATTA AATGGAGAGC
  TCTCAAGCAA AATACATGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51566787	NES14862273	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36981497					SNP	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51566787	NES14862273	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:25034155 () rs orientation: forward

Symbol	Name	Function Class
Gm38777	predicted gene, 38777	within coordinates
Rr379081	regulatory region 379081	51 bp downstream
Rr627285	regulatory region 627285	207 bp distal