rs3698101 SNP Detail

Summary

• ID
  rs3698101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:96983269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGC CAGGCTCCTA CTTAGGTTAA
  Y
  TGTGCTAAGT ACTGAGCATA AAGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5074273	WI_WGS_7_87076404	WI	MOUSE	f	SNP		T	C
ss145438093	ENSMUSSNP3199379	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss322339982	CHEV_7_104482572	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs3698101					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96983269 () rs orientation: forward

Symbol	Name	Function Class
Kctd21	potassium channel tetramerisation domain containing 21	Intron
Rr400445	regulatory region 400445	1670 bp downstream
Rr651403	regulatory region 651403	1725 bp distal
Rr651404	regulatory region 651404	1729 bp distal
Rr651405	regulatory region 651405	257 bp distal
Tssr67964	transcription start site region 67964	1731 bp downstream
Tssr67965	transcription start site region 67965	1411 bp downstream
Tssr73573	transcription start site region 73573	1967 bp upstream
Tssr73574	transcription start site region 73574	1948 bp upstream
Tssr73575	transcription start site region 73575	1920 bp upstream