rs36980495 SNP Detail

Summary

• ID
  rs36980495
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102057101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATTAGGG AAGGCAAGAA
  CAAGCAGGTT GTAAATGGAG CAGCTGAGCA GAGAAGCAAG AGAGAAAAAA AATGTCCGAA
  GCACCCAGCT TTAGTTCTGA AAAAGGCAAC TTCATTATTT CCTGAAATAT TATAAAGACT
  TAGACCACAG AAACACCTGT GGACATTGAC CCAGAAAGCA GAGCCAAAAG TCATCTCTAA
  K
  TTTGGAAACT GAGCCTGTGT AACTAGAGGA TGGTCCCGTG ACACATTGGC ACTAATGGTG
  AGTAGCCTCC TCTCTCCTAC AACTGAGATC CTATCTGTGC CAGCAGGCCC TGCCTCTTGC
  TCTGGGATTT CCCTACTGCT GTCCTGATGT CTTCACCCCA CTTCCTTAAT GTGACAGTTT
  ACCATCGGAG ATTCTCAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51587513	NES14668405	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G		G	T	T	G		T
ss320854652	CHEV_3_101953708	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36980495					SNP	G	G	G	G	G	G	T	G	G	G	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51587513	NES14668405	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102057101 () rs orientation: forward

Symbol	Name	Function Class
Gm65665	predicted gene, 65665	within coordinates
Rr582191	regulatory region 582191	48 bp proximal