rs36979381 SNP Detail

Summary

• ID
  rs36979381
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143913896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGGGTA CATATAATAC
  AAGTGTTCAG ACCATTATAA AAATAGCTCC AAGAAATCAT TGTAATGTAA AGTAAAATTA
  ACTCATTCCG AATACTGTTG CATTGTGTCT GTTGGCCTGG GAAGACCTGC TGATGTCACC
  ATTCAGCCAG TTATCTAAAA TGAGACATAC AACTCCGGTA CTTTTTTTTT TTTTTAAAGA
  W
  ACACAACCCG TTTCAGGGGC TTTATTCAAC ATAGGAGCCG AATGGATCCC AGATAAAGCC
  TTTGCTTTCC CTACTTGCCC TGAAATTATT TTTCTGTACT TCATCTTCTC AACTAAGGTC
  TTACTCCTGG ACTTTATAGG CAGGAGTTGA AGATAAGCAT CTAGCTCTTT GATGAGGAAA
  AGGAGAAGAG ATTGTGCCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51655481	NES14643426	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	T	A	A	A	A	A	A	A	A	A	A
ss136029286	ENSMUSSNP6158277	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36979381					SNP	T	T	A	A	A	T	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51655481	NES14643426	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143913896 () rs orientation: forward

Symbol	Name	Function Class
Rr586603	regulatory region 586603	205 bp distal