rs36979146 SNP Detail

Summary

• ID
  rs36979146
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101956036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTTAAGG GTACTGTGTA
  GATACAGTTT AGATTTGTCT TCAAACAAAC CTACTATGAG AAAGATGAAT AGGGACAATT
  ACCACACTTC CACACAGACA GAATAGTAAA TGTATTATCA ACTTTTTGTG AATTAATAAT
  GACTTATTTT AGATAGGAGT AAAAGGTACC ATACAGAAAG TGGCACAATG TTTGTTTTAC
  R
  TAAATTATTC TAGATATATG ACTTGTACAA TTCAGAACGA AGTGGAAAGG AAAAAAATAG
  CTACGGGAGG CAGATCTTTC TTATTTATTA TTAAATAAAT TGGCATGCAG AGAGGTTCCA
  TTTACTCTGA GGGTCTGGCA TAGAGGGATG TCTGTAGAAA CGTGCTGTGG ATAATGTAGA
  TCGTTGCAGA TGAGGAGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51588920	NES14670338	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		A	A		G
ss320854066	CHEV_3_101852643	CHEVERUD	SCREENING_POP	f	SNP						A			G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36979146					SNP	G	G	G	G	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51588920	NES14670338	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101956036 () rs orientation: forward

Symbol	Name	Function Class
Rr375477	regulatory region 375477	333 bp upstream
Rr407227	regulatory region 407227	117 bp proximal
Rr582166	regulatory region 582166	472 bp proximal