rs36979071 SNP Detail

Summary

• ID
  rs36979071
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86768709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAAAAGAA AGGATTGGCT GGTCACAGAC AAAGCAATGT
  GCCCTGGGAT GTAGGGCTGT AGGACCAAGA GGCTTGCCCT GTGGGCACTG ATGGCTGAGG
  R
  AGGACCAAGA GGCTCACCCT GTGGGTACTG ATGGCTGGCA GGCACAGCTT GACCTGTTAA
  TCTCCAGACT GCTTTCAGAG AAAAAGAAGA TCCCTGACCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51749473	NES14799946	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36979071					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749473	NES14799946	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86768709 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Cpgi17670	CpG island 17670	1205 bp proximal
Rr633514	regulatory region 633514	885 bp distal
Rr633515	regulatory region 633515	1003 bp proximal
Rr633516	regulatory region 633516	1847 bp proximal
Tssr57508	transcription start site region 57508	993 bp downstream
Tssr61863	transcription start site region 61863	1594 bp upstream
Tssr61864	transcription start site region 61864	1795 bp downstream
Tssr61865	transcription start site region 61865	1863 bp downstream