rs36976258 SNP Detail

Summary

• ID
  rs36976258
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130999820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGCCCTA TCGTGTGTCT
  GTGCCTCGGG TCAGTTGTTC AAGGTTTCTT CTCACTTCCA AACTGACCCA TGTGAGCTCT
  GTCCAGATAA AATTAGCAGT TGCACAAATA GATGGAGAGC ACCACCTACG ATGGTCCCTG
  TGCTTGGAAG GCCTGCTCTC TCTACTTACG AACACACCAA CCTGGGCAGC ATCCCTTAGA
  R
  TGGCCTGCAG TACGGATGGA TGCTCTGGGC CAAGCCAGGG AACCCCATCC CAGCTTGAGA
  ATTTACTTAG GGTCCTGAAC TTTCAAATGA TGTTTCCCTA TGGAAATCTC CCAGGGTACT
  GGCACCAAGT AGATTTAAAT TTCCAGTCGA CTACCTGGGC CCTCTAGTCA GCTTCTTAGT
  CTGGTCTCCT CATCTGGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss51634460	NES14649267	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs36976258					SNP	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634460	NES14649267	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130999820 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	Intron
Rr585291	regulatory region 585291	1524 bp proximal
Rr585292	regulatory region 585292	1967 bp proximal
Tssr31722	transcription start site region 31722	349 bp upstream