rs3697480 SNP Detail

Summary

• ID
  rs3697480
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:96983171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTTAAAGT GTTTATCTCC AAAACAGGGA CATAAATAGT
  CCTGTTGGTG CACAAGTCCG GGAAGGTGAA GATAGGTCTA ACTAAACAAA GTTAAAAAAA
  W
  AAAAAAAAAA TGTCTTCCCT ACTCCCTGCC CAGCCCCAGT TTCTGGGGAT AGCAAGGGAT
  TTCTTCAGCA GGGAAGCCAG GCTCCTACTT AGGTTAACT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss5073648	WI_WGS_7_87076306	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs3697480					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96983171 () rs orientation: forward

Symbol	Name	Function Class
Kctd21	potassium channel tetramerisation domain containing 21	Intron
Rr400445	regulatory region 400445	1572 bp downstream
Rr651402	regulatory region 651402	1955 bp distal
Rr651403	regulatory region 651403	1627 bp distal
Rr651404	regulatory region 651404	1631 bp distal
Rr651405	regulatory region 651405	159 bp distal
Tssr67964	transcription start site region 67964	1633 bp downstream
Tssr67965	transcription start site region 67965	1313 bp downstream
Tssr73573	transcription start site region 73573	1869 bp upstream
Tssr73574	transcription start site region 73574	1850 bp upstream
Tssr73575	transcription start site region 73575	1822 bp upstream
Usp35	ubiquitin specific peptidase 35	1944 bp upstream