rs36973890 SNP Detail

Summary

• ID
  rs36973890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85272801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTCCCCC ACTCCCAGGA
  GGCCTGTAGG GGCTTTGGGG ACAGCAATCA AAGCTGAAAA GCAGGACAGC AACTCTCAGA
  TCTCTGAGGG AGCGAAGAGA ATAATGTGGC CTCTATCCTC AAACTCTGGG AGGTCCCAAG
  AGGCCCAGCT CAGTGGTGGT GGGGCAGGTA GCAGGCTAGA GTCAGAAAGT GGACTTCCTT
  Y
  GACGGGTACA AAGGCACTGG AAGGTGTGTG GACTCCTTCA GGCTACAGAG GGCTGGAGGT
  TCAAGGTCCA TCCTGCAGAC CCAAGGCTGA ACAGAAATAT CACCACTAGG GAGTGAGACT
  ACAGCCTGAC TCTCTGCCCA GGGCTGCAGG GCAAATACTT CAAGACAGAC AAGACCTGCT
  TGGTTGCCTG GGCTTCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51356113	NES13743924	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36973890					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51356113	NES13743924	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85272801 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr633168	regulatory region 633168			1469 bp distal
Rr633169	regulatory region 633169			within coordinates
Sfxn5	sideroflexin 5			Intron
				Noncoding-Transcript-Variant