rs36972219 SNP Detail

Summary

• ID
  rs36972219
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:100060995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGACAGGT GTGAGCTGCC
  ATGTGGGTTA TGAGAATATA ACCTGGGTCC TCTGGTCTGT GCTCTTAACC ACTTGAGTTA
  TCATCTCTCC AGCCCACCCT GTAATATAAC TAAACAGATG CTCTAACAAC TATCTGTTAG
  ATCGGTCTAC TAGACAACAG TAGGTAACCA AACCCATATA AGCCTATAGT GTTGTATCTG
  W
  CTCCTCATTG GTTTAGAGCA GCGGTTCTCA ACCTGTGGGT CGTGACCCCT TTAAGAGATT
  CATGACCCTT TCACAGGAGT CACTTAAGAC CATGGGAAAA CACAGATATT TACATTATGA
  TTCATAACAG TAGCAAAATA CAGGTATGAA GTAACAATGA AATTAATTTT TATGGTTGGG
  AGGGTCACCA ACACATGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51789658	NES14780392	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	A	A	A	A	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36972219					SNP	T	A	A	A	A	A	A	A	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51789658	NES14780392	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:100060995 () rs orientation: forward

Symbol	Name	Function Class
Rr635572	regulatory region 635572	1826 bp proximal