rs36969957 SNP Detail

Summary

• ID
  rs36969957
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97950347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGGCGGCT GCCCCCCAAA
  AATGGAATAA AAAACAAAGT GGAAGCTTTG TTGTTTGAAA TTGAAGGGTG CTGTGAGAAT
  CACTGCAAAT CCCTGCTGTC TCCGCCTGCC CTCAGTTCTC CTATTTTGGG TAGTAGTGCA
  AGCAGTCATT TTAGAAAACA TGGCCGTGTC CACTGGACGG CACTCCTTCC AGAGGCCCTG
  W
  GCCAGAAGCA ACAGAGGGAC ACACAGCCAA GTCCCAGCCA GCAACCCAGA CTTCAGCTCT
  CAAATTCTGC TACTTGAAAT TTGCATAAAC GTTGAAGGGA GAAAAGAAGC GCCCTGTGTC
  TGTCACTCTT CTACTTTAGG CTCTGCAGCC ATTCAGAGCA TTAAACCTCG TCTGAGGGTG
  CAGCGGATGA GCGCGCTGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51002326	NES13912234	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36969957					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51002326	NES13912234	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97950347 () rs orientation: forward

Symbol	Name	Function Class
Notch2	notch 2	Intron
Rr581620	regulatory region 581620	1857 bp distal
Rr581621	regulatory region 581621	1613 bp distal
Rr581622	regulatory region 581622	within coordinates
Rr581623	regulatory region 581623	1670 bp proximal