rs36969792 SNP Detail

Summary

• ID
  rs36969792
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18819580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTCTATT ACAGTGTCTT
  ATCATTGGTG ACAGAGACCA TGAAATAGTC CTCTTTGGAA CTTCAGCATG TGGGAAAAAA
  TACATACTAC GTGCTCAGTG TGTGGCTTTA AAACTCTTCC TGGAGGAATT TCTGAAATTG
  GCTTTTAACT GTGGCCTCTA TTCACATCAC AGCCCTGCCA CCTAGTGGCC AATTACCCAG
  R
  TTTAACTACA ATACCTCGGA TGAAAGGTGC GAATACTGAC TTGTTTATCA AAGAACTGAA
  GTGTAAAAGT ATATTCAGCT TCATTAGGTA AGGAGATTCT AAGCCATACA TAGAAAACAT
  TTTACAACAA TGAGAATGTT CAAACTTTTA ATGTTTCGCT AAGCTGATTG AAATGAATGC
  CTATAGATAA GACGTTCGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51245883	NES13801904	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36969792					SNP	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51245883	NES13801904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18819580 () rs orientation: forward

Symbol	Name	Function Class
Rr626951	regulatory region 626951	within coordinates
Rr626952	regulatory region 626952	8 bp distal