rs36969041 SNP Detail

Summary

• ID
  rs36969041
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18818849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAATCCT CCTGCATCAA
  GCTTTCAACT GCTGTGATTA CAGGTGTTTA CTACCATGCC CAGCTTTCTT GCCTTTGTTA
  AGGCTAAATC AAGTTTTTCT CGTTCTCATC CCAACTGTCA CATATATTCA AGTGTTGTGT
  AAGCTTGCCC CAAACCTTCA TCCAAAGCAT CTTTTCTGTC TGTCTCCTTT CAAACAACAG
  R
  TCTTACCTTG AAATCTTGAG ATAGAAGCTT TATCTATCAC AGTCCAGTCC TAACTTGTTC
  CAAATGCTGA CCTTTTAGTA ATATTCTCCA GCCCATGTAT TCTAGGCTAT TTTGCAGCAT
  TTCAGACTTC TACCTACAGA CTCTAATAGC ACTTTTCATC CAGCTCTGAT AAAGATAAAT
  GTACTTGCCA AGTGTACTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51245899	NES13801939	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	A	G	G	G	G
ss133041755	ENSMUSSNP421279	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36969041					SNP	A	A	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51245899	NES13801939	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18818849 () rs orientation: forward

Symbol	Name	Function Class
Rr626951	regulatory region 626951	576 bp proximal
Rr626952	regulatory region 626952	702 bp proximal