rs36968488 SNP Detail

Summary

• ID
  rs36968488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90456037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCCATTG GCCACTCTTG
  CCAATGGTTA ACAGAGTAGC TCTGACTCAC TGGGGATGAT GGTGTTCCTC CCAGCCTAAC
  AGATCCCTAA GCTGGGCCCT TTTCCCTTTT TCTTTCCCCT CCTGGCCATC CTGACTCAAT
  GGGAAGTCTG GGTGCGTGGC TGAAGATCCC AACACTACAT TGCGAGCTGA GGATGTCCCA
  Y
  GCAGTTGCCA AAGTAGAGTG GGCTGGGTCT CTTTCCCAGA CCCTATGTTA GAAATGTGCT
  TTATTCGTTT ATTTTTGCTT TTACTTATTA TATGTATATG GGGCCGGGTA ACACACATGA
  CATTGTGCAT ATATGGAGGT TGGAGAACAC TTTGTGAGAG TCAGTTCTCA ACTACCAGGT
  GAGTTCCAGG GATTGGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51362795	NES13737344	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36968488					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51362795	NES13737344	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90456037 () rs orientation: forward

Symbol	Name	Function Class
Gm44421	predicted gene, 44421	within coordinates
Gm66826	predicted gene, 66826	1450 bp downstream
Rr634217	regulatory region 634217	1528 bp distal