rs36966422 SNP Detail

Summary

• ID
  rs36966422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:88936026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGCCATG CAGTGTGCAG
  TGTGGGCGGT GGAGGGATGA CCTGGTCTGT CCTCACTCCA CCCTTACAGA TGTACTCACA
  GGCATCACTT GCCTGAGCCT GTGTCCTCTT CTGTAAAGCG GAGATTCAAG CAGAGCTGTT
  ATGTGAGGGT CATAGCTGGC ACCAGCTGCC ACAAATTGAC ACCTTAGATG GACTCATTCT
  Y
  TCTGTTCTGT AGGCTATGCA TTTGGGGTCA GGGCAGAACA GCCAGGGCTT CCTAACTTCT
  TGTTGTGTGT TGTGCGATTT CTTCTTTGGG CATACTTGAA GAGAGGGAGT GTGTCTCTAT
  GAAGACACTA ATTCTGTTGG ATCAGATCCC CGCTCAAATT CATGACCTCA TTTAACTGAA
  ATTTATTCCT GATAGGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51761629	NES14795909	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36966422					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51761629	NES14795909	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:88936026 () rs orientation: forward

Symbol	Name	Function Class
Rr634045	regulatory region 634045	737 bp proximal
Rr634046	regulatory region 634046	1992 bp proximal