rs36966158 SNP Detail

Summary

• ID
  rs36966158
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:18618008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTCACACA GTAGAAAATG GCTGGAGTTC GGATGCAGGC
  ACCCTGGCTG ATTCAGACAC TGGACAGGAA GCACTACTGC CTGCCGTTTC TTGGGAAGCG
  R
  CTTCCAGTCT CCAAACATTT TCCTCTGCTG TGCAATGGGC ATCCACACAC TTAGCCTCCT
  GTCCTGCCCC GTAGGGTTGA GCATCCTCAG ACTTGGACCC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss51883642	NES14909118	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs36966158					SNP	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51883642	NES14909118	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18618008 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pglyrp1	peptidoglycan recognition protein 1			Intron
				Noncoding-Transcript-Variant
Rr642924	regulatory region 642924			107 bp proximal
Tssr64752	transcription start site region 64752			596 bp upstream