rs36965724 SNP Detail

Summary

• ID
  rs36965724
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151897363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAAAAGAA AAAGAAAAAG AAAAAGAAAA AGAAAAAGAA
  AAAGAAAAGA AAGATAATTT GGGGAGTGAG TTACTCTAAA AAGCACTGCC AAGAGAAAAC
  K
  TAAAGAATTA AGAGTACCAG CTGGTATACT TGAAAACTCT GAAGTCAAAC ACGATTAATG
  AGCCTGAATC CTACGGCTTA ACACAGAGGT GCACTTGAGC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51060592	NES13427716	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36965724					SNP	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060592	NES13427716	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151897363 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13944	CpG island 13944			1975 bp proximal
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm64624	predicted gene, 64624			603 bp upstream
Rr587481	regulatory region 587481			185 bp distal
Rr587482	regulatory region 587482			100 bp proximal
Rr587483	regulatory region 587483			113 bp proximal
Tssr36163	transcription start site region 36163			1997 bp downstream