rs36962785 SNP Detail

Summary

• ID
  rs36962785
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130052078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACTTGTTC TGTAAGCCAG ACTGGCCTTG AACTCAGAAA
  TCTGCCTGCT TCTGTCTCCC AACTCTTGGG ACTAAGGGTG TGTGCTACTG CGACCCTGTT
  K
  ATTTCATCTT TACAGAAGCT TTTTAGCTTT CTCTATTCCC ATCAGCCAAG TCTTAGAATT
  GCGTATTGTA ACACTAGAGT CATTTCCAAA CACCCCTTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J
ss51632444	NES14653503	PERLEGEN	MM_PANEL2	f	SNP	G	G	T
ss135893300	ENSMUSSNP1638373	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J
rs36962785					SNP	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51632444	NES14653503	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130052078 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Rr585148	regulatory region 585148	1843 bp distal
Rr585149	regulatory region 585149	1444 bp proximal
Rr585150	regulatory region 585150	1863 bp proximal