rs3696107 SNP Detail

Summary

• ID
  rs3696107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137522970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTT CCTTCCTCAG GCCCATTACG
  Y
  GTTGAAAAGG ATTACCATGG ACAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5072265	WI_WGS_4_135399768	WI	MOUSE	f	SNP		T	C
ss147620218	ENSMUSSNP1881285	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss321367525	CHEV_4_137351574	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3696107					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137522970 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Cpgi15139	CpG island 15139			within coordinates
Rr602723	regulatory region 602723			814 bp distal
Rr602724	regulatory region 602724			within coordinates
Rr602725	regulatory region 602725			649 bp proximal
Rr602726	regulatory region 602726			715 bp proximal
Rr602727	regulatory region 602727			784 bp proximal
Tssr1350	transcription start site region 1350			626 bp downstream
Tssr44149	transcription start site region 44149			649 bp downstream
Tssr44150	transcription start site region 44150			691 bp downstream