rs36959982 SNP Detail

Summary

• ID
  rs36959982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135146421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTT TCTTGCTCTA ACTTCTATCC
  Y
  GCATTTTAAG ATGGCGGCTG CTTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51652676	NES14652412	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	T	T	C		C	T	T	C		C
ss320971815	CHEV_3_135103624	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36959982					SNP	C	C	T	C	C	C	C	T	T	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51652676	NES14652412	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135146421 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930539J05Rik	RIKEN cDNA 4930539J05 gene			1995 bp upstream
Cpgi13855	CpG island 13855			1008 bp distal
Rr398041	regulatory region 398041			184 bp downstream
Rr585711	regulatory region 585711			1439 bp distal
Rr585712	regulatory region 585712			1294 bp distal
Rr585713	regulatory region 585713			793 bp distal
Rr585714	regulatory region 585714			208 bp proximal
Tssr1058	transcription start site region 1058			384 bp upstream
Tssr31817	transcription start site region 31817			1880 bp downstream
Tssr31818	transcription start site region 31818			1607 bp downstream
Tssr31819	transcription start site region 31819			1597 bp downstream
Tssr31820	transcription start site region 31820			1562 bp downstream
Tssr31821	transcription start site region 31821			1486 bp downstream
Tssr31822	transcription start site region 31822			1220 bp downstream
Tssr31823	transcription start site region 31823			1191 bp downstream
Tssr31824	transcription start site region 31824			1160 bp downstream
Tssr35784	transcription start site region 35784			1955 bp upstream
Tssr35785	transcription start site region 35785			284 bp upstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3			Intron
				Noncoding-Transcript-Variant