rs36959434 SNP Detail

Summary

• ID
  rs36959434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75461310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCAGAAT TGAAGGCATA
  CCCTACCACT GCCCTGCTTC AAATATAACT TACAAGAAGT GCAAAATATA AGTTCCTCTG
  AAATTAGAAA GTTAGTTTCC CAAAATCATC TTCTCTCAAG GTTGTATTAA ATCCTGGGTA
  TAACCACAAC CAACCAACTA AAACAAACAA ACATAGGAGA GGTTTATACT CAAATCTTGG
  Y
  TCTAGTCCTT CCAAGACTTT AGCAATGCAT TGTATTCTTC TGAGTCCCAA GGAGTAAATT
  TACTTCTAGT TTTGGTGTCC TTAGCTACAA GGTAAGTGAA ATAATTGTTT TGAAGTTAAA
  ATCTAAGGGA AGAATAGAGT CCATAAAAAC CTTCTTCCAT ATCTATATTT TGTTATAATG
  AATCTTATTT GCTTTTTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51557873	NES14678943	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36959434					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51557873	NES14678943	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75461310 () rs orientation: forward

Symbol	Name	Function Class
Pdcd10	programmed cell death 10	Intron
Rr578348	regulatory region 578348	1843 bp proximal