rs36958769 SNP Detail

Summary

• ID
  rs36958769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26693449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGACACA AAACTGCTTT
  CTGCCACCAT GGGGTTTTTC AGTTTTTCTT CACCTGTGTC AGAGGCTCAA GAATTCCTGT
  AAGGAAAAAA ATCAAAGCTA GGAGAAAGCC CAAGAAGTAA GAGAGAGGTC GGAGCACTTC
  AGCCTGCCTG GCTGCGGTTC TGTCATTGCG AGAGACCATG TCATTACCCT GGCATGCCTG
  R
  CACACAATGG GCACGCTGAA AGGCTGCAGC TGATGTGGGA AAGAGGGATA CAGCTGGAAG
  CAAGGCTGTT GTTGCCTTGT CTCCCAGGCA CACAGATTTA AAGTATCCAA AGCGCTTCTG
  AAAGTGCGCA GGTCTGCCTA ACTTCACCCG TTGCCATGGT GAGCAACACA AACGTAATCA
  AGATTGAACT GAGACGTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51442526	NES14434430	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36958769					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442526	NES14434430	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26693449 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	1746 bp upstream
Gm65438	predicted gene, 65438	within coordinates
Rr574324	regulatory region 574324	within coordinates
Rr574325	regulatory region 574325	147 bp proximal
Rr574326	regulatory region 574326	856 bp proximal
Spata16	spermatogenesis associated 16	Intron
Tssr28597	transcription start site region 28597	1663 bp downstream
Tssr28598	transcription start site region 28598	1640 bp downstream