rs36958668 SNP Detail

Summary

• ID
  rs36958668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31090104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTCACTG CTGTTGTCAC
  TCACTACACA CAGACAGACA CAGACACACA GAGACACACA CTTGTTACCT CCAGAACCCT
  GTGGCCAGCC CAGCCTAACT GCGCCTATAA ACATTGAGAG ACACCACTCT CTGGCACTCT
  CAGGTTCAAG GTTGGGGAAC GCCTTAAGAC AAGGACCATG CCGTGCGTGC GCAGTATCTG
  Y
  ACCAGTAAAT TTCTTTAGCT TAGAAACCCG TCCACGTCAA AACCAGAAGT AGAAGACAAG
  GCGAATCATG TTGCTACTGA ATGTGACTGA AATCTACCAT GATTTAATAT CTACCATGTA
  TTTAAAATTC TTAGATTAGG GGATATGAAA TATGGGTGTG TGTAGGGAGA TGGGAGTTGG
  ATCTGGACAG AGTACAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51260169	NES13793977	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36958668					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260169	NES13793977	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31090104 () rs orientation: forward

Symbol	Name	Function Class
Gm56937	predicted gene, 56937	566 bp upstream
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627885	regulatory region 627885	130 bp distal
Rr627886	regulatory region 627886	within coordinates
Rr627887	regulatory region 627887	407 bp proximal
Rr627888	regulatory region 627888	577 bp proximal
Rr627889	regulatory region 627889	1219 bp proximal
Tssr55448	transcription start site region 55448	601 bp upstream
Tssr60154	transcription start site region 60154	304 bp downstream
Tssr60155	transcription start site region 60155	1633 bp downstream
Tssr60156	transcription start site region 60156	1847 bp downstream
Tssr60157	transcription start site region 60157	1918 bp downstream