rs36957478 SNP Detail

Summary

• ID
  rs36957478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83450675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTTCTG AGCAAGTCCA
  ATATCCATGC CTCTGTGAGG TAGACCAGGG GGACCTCACA GGCTCCCTTT AGACCAAGTC
  GCCTGCTCTG GCCTCAGACC CAGCCTACAC AGCGCGCAGC CAAGGGGCAG TCGTGGATAA
  GTGGCCAGCC CTGGTCTCTT CTTTTCTGAT GCACTAACAG AAACATCAGA ATTGACTGCC
  Y
  TGCTTTCCAG CTTCATGGTT CCCCTGCCCT CTCATGCTGT ATATTCCAAA CCTGCAGCCC
  AAGCCTTGTT TTATTTTTAT TTATTTTTAG ATTTACTTCT ATGTGTATGT GGTATTTTGC
  CTATCTATAT GTACACATTC TGCATGACTA TATACAGTAT AGTCCTCTCA GAGATCAGAA
  GCAAGCATCG GATCCATTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354873	NES13746904	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36957478					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354873	NES13746904	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83450675 () rs orientation: forward

Symbol	Name	Function Class
Rr632872	regulatory region 632872	1611 bp distal
Rr632873	regulatory region 632873	132 bp distal