rs36954838 SNP Detail

Summary

• ID
  rs36954838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143418622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTACTTT TATAAGCAAA
  GTGATTTTTA AATAAAAATA TACTATACTT TTTCTTCTGT CACACAATAG CTTCCATGCA
  CAAGACTTCA ATAACAACCT GTTTTACATT CCAGATCAAT TTTAAAACAT GCTTTCGTTC
  ATTTGTTTTA AAGTCGCTTT TAATGTGGTA CACAAGCAAA GTGAGCAGAT TTACAAAGCA
  R
  AAGAATAATA CTTACTCATG TGCAAATAAC CAGTGTCCGC AGGTATAGTT GAAAGAAGGA
  ATAACTAGCC TGTGTGTGTG TGTGTTATGT TTGTGTGTTG CCTGTAATAT AGACTTAATA
  GATATTTTTT TCACTGTGTT ATCTGTTTAA TAAAGACCAG CTATAATACA ACCTGTGGGC
  TATCTGAGCA ACTTGGTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51661967	NES14646317	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36954838					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51661967	NES14646317	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143418622 () rs orientation: forward

Symbol	Name	Function Class
Gm6260	predicted gene 6260	718 bp upstream
Rr586554	regulatory region 586554	307 bp proximal