rs36954713 SNP Detail

Summary

• ID
  rs36954713
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143913591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTACCA GAAATCTTGC
  TTCACTGTGG TTACAGAAGC TCAAAGGTTG TAGAGGCTAA CATCTTTGAG GAGTAGGAAG
  GGAATGCAGT CACTGTAATC AAAATTCAGG TGTACTTTAA CCACAGCGCC ACCTCTGGGT
  AGTCTTTATT TCTGCATCCT TTACTCTCCA AACATCCCTG TCTCTTCCAG GTAGCAGCAA
  R
  ATTCCCCTCT GTATTCTCAA AAGCGCCTGG ACTGAGAGAA AAACCAATGC CAGTCTGATT
  TCAGTGATCC TAAACACTCA AAAATGCTAT ACAAGTCCCT GCTGGAGAAG GGTACATATA
  ATACAAGTGT TCAGACCATT ATAAAAATAG CTCCAAGAAA TCATTGTAAT GTAAAGTAAA
  ATTAACTCAT TCCGAATACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51655490	NES14643423	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36954713					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51655490	NES14643423	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143913591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13895	CpG island 13895	1870 bp distal
Rr586603	regulatory region 586603	within coordinates
Tssr35973	transcription start site region 35973	1845 bp upstream