rs36952781 SNP Detail

Summary

• ID
  rs36952781
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:118419785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTGTAGT CTAGACCTCT
  GCACCCCATG ATGTGGGAAG AGGGGATCCA TTCATGGCTC AGCTTATGTG GGAGCTTTCA
  AGGGGCTAAC CAGTGAGTAT GAAATCTGAG CTCTTGCAAA CTATCCAAAT CTGACACAGA
  GACTTCTCTT AGGAGAAATT GTTCACCCAA GCTACATAAT GTTCTAAAAA TACTGAGATG
  K
  GATCCAGAAG ATCTGGAATC AAATTGCTTT GATTTGTTTA CACAGAAATT CTTTGCATAA
  TCATAAATAT TAAACTGGAA TTGCATGATG TATTGTAGGT CAATAAGTGC TATATAATAA
  AGCAGATGTG TGTTAAGACT ATGGCTGCAA AAACAGAATA TGTATATTTT AGAAGATATT
  AATGAAGCAT ATTACTGTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51602822	NES14665018	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	T	T	T	T		G	T	G	G		T
ss320901565	CHEV_3_118329054	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36952781					SNP	G	T	T	T	T	T	T	T	T	T	G	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51602822	NES14665018	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:118419785 () rs orientation: forward

Symbol	Name	Function Class
Dpyd	dihydropyrimidine dehydrogenase	Intron
Rr583911	regulatory region 583911	62 bp proximal