rs3695082 SNP Detail

Summary

• ID
  rs3695082
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65534295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGATGC TCTTGAAGTG
  CCTGATCGGT GCATGCCTAG TCAGGACTCA GCACTCAGTC AAGTTTGCTG AATGAAGGAG
  GAGGATATAG GATTACTTGA GGGGACCGGT TGAGGCTGTG TTAGACCAAT GAGAGACTAC
  TTTCTTGTCT AGATGAAGGT GAAGTCAAAG TCACCTGACA ACTTGCAGAC TGGAGCTGAG
  Y
  GAGGCCTGGA GTGGAACACA TGCAGTCATT TGACCCAAGT CACATCTATT GCTCCTGCTG
  GCTAGAGATT CGGTTTTTCC ATAATCTCAT GGGTTCCAGA TAAAGGATCT GGTTGATGAA
  GAAAGGCCTT AGGAGAAGTG AATCAGAGAA GGCCACTAAC CAAAGACCAC TACTGCCACT
  AGTTGCAGAG GAACACTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5071236	WI_WGS_3_66158592	WI	MOUSE	f	SNP	T							C
ss45548683	mCV24249855	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss50965452	NES13945920	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C	C	C	C
ss135252706	ENSMUSSNP2217996	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3695082					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50965452	NES13945920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65534295 () rs orientation: forward

Symbol	Name	Function Class
Rr577712	regulatory region 577712	549 bp distal
Rr577713	regulatory region 577713	189 bp proximal