rs36947771 SNP Detail

Summary

• ID
  rs36947771
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:22013069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGATGAC AGAGTTAAGG
  CAATAACCCA AGCAGTACGA TTGCCACACT AACAGCCTGT TGGAGGCAGT GGCAGTCTTT
  TTCAGTGTAG GAGGGGTGTG CTTCTGGAGC CGTTGGTGAC TTTTGCTCTA GTGATGCACT
  TTACAGTTTG AAAAGTCAAA TGATGTCACT TAGCACAGTG CAAGCTGTTC AAACTAGCTT
  S
  TGGACCTCAA GGGAGTCAAG ATTTGCTCAC TGTTTGGGTC CCTAGTCATG AGATCACAGG
  AGCACTCCTC TTTAGAGCCC TTGAAGACCC AACCTACGGA TACCCAGGAT CCTAAGCCCA
  GAAAAGTGCT TGTGGGGGTT GGCCAGGGAG ACATGTTTAC ATTGATTGGC CCAAATACAA
  TCACATGGGC ACATACGTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51434206	NES14436517	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36947771					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51434206	NES14436517	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22013069 () rs orientation: forward

Symbol	Name	Function Class
Gm31813	predicted gene, 31813	within coordinates
Rr574174	regulatory region 574174	1442 bp distal
Rr574175	regulatory region 574175	159 bp distal
Rr574176	regulatory region 574176	within coordinates
Tssr32752	transcription start site region 32752	263 bp upstream
Tssr32753	transcription start site region 32753	143 bp upstream