rs36946193 SNP Detail

Summary

• ID
  rs36946193
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89013675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGATGGGT AGGAACCTGG
  GAGAGGGAGG TGTGAAGAGC ATTGGGTAGA AGAGAAAAGC CAGTAAAGGA CTTCATGTTG
  AGGATGCCCT AAAGATTAGG CAGAGAGGCC TTAAGGACTT TCCCCTTCCC CAGCCACCAG
  GGAGAAGCTG CCCCGGTCTG GAACATGCCA CCTAACAGCC TTAGTTTTAT CCCTGATGTC
  R
  GCTCTGCACG ACCCATATCT GTAAGGGTGC CAGTAGGGCC CAGTGCAAAA GCCTAGTGCT
  CCCAAATGCA TTTGGCTTGA GCCATTCCAT GCCTGTCACT GTCCTAGGCA GCCAGAAGCC
  TGTCTTCTGT CTGTTTTTAC CCTTTCTGTT CCATTATCCT CTTATATCCT GCCAGCAAGT
  GCCCAGCGAG TCTGGGTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51760849	NES14794812	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36946193					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51760849	NES14794812	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89013675 () rs orientation: forward

Symbol	Name	Function Class
Gm66902	predicted gene, 66902	within coordinates
Rr1306	regulatory region 1306	440 bp distal
Rr634070	regulatory region 634070	238 bp distal