rs36946146 SNP Detail

Summary

• ID
  rs36946146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123031142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTGGTGCG CAGAGCTCAG AGTTGCTGCC TTTCTCAGTC
  TTGGAGCACT TGGGCATGCC TCACTGCTGG GGCTGCTAAC ACCAGGCAAA GATCACAGAC
  Y
  GCTGGACTTT TGCAGCAAAC ACATTTCACA GTGCTAGAGG GGTTACAGCT CAAATGTCTT
  GTGTTTGAAC ACTTGGTCTG GTGGCACCAC TTTTGGAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51024610	NES13910011	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	C	T	T		C	T	T	C		T
ss135760929	ENSMUSSNP5985747	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
ss320918248	CHEV_3_122940411	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36946146					SNP	T	T	C	T	C	T	C	C	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024610	NES13910011	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123031142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13775	CpG island 13775	1141 bp distal
Rr584475	regulatory region 584475	1067 bp distal
Rr584476	regulatory region 584476	within coordinates
Synpo2	synaptopodin 2	1344 bp upstream
Tssr35497	transcription start site region 35497	1371 bp upstream
Tssr35498	transcription start site region 35498	1336 bp upstream