rs36944178 SNP Detail

Summary

• ID
  rs36944178
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8103827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTGACTG ATATTTATGG
  TCCAAATAAT TCTTTTAATC AAGCACCGAG ATTATTGCTT ATTCCAAGTG AGTAATTCTG
  ACGTTGAGAT TTGTAACTGG GAAGAAAAGA TTAGTTTCAA CATTTACACA GGAATGAGTC
  TCTCCATGAA AGGCATGTAT ACACATACCC CACCACTCAA GCTGGAAAGG AGAGAAAGTT
  M
  AGTCTCATCA GAGATTCAAT CAATAATGCT GTATTATTAT AGCAAGCCTC TTTTCCTACT
  AGTGATGAAA ATGAATTCAT TGTGTTAAGA AAATTTGTCT GTAATACTTT CTAGAATTGG
  ATTACTGATT CACTGTTTTG TGTTCGAATT TATAAAAATT CTCTGAAAAT CTAAGTTCAT
  AAGGATTCAT GGAAAATCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51554658	NES14866359	PERLEGEN	MM_PANEL2	f	SNP	C			A	A	A		A	C	A
ss132961565	ENSMUSSNP3257636	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36944178					SNP	C	C	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51554658	NES14866359	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8103827 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	1280 bp proximal
Rr626348	regulatory region 626348	1101 bp proximal
Rr626349	regulatory region 626349	1979 bp proximal