rs36943752 SNP Detail

Summary

• ID
  rs36943752
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143450332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG ATGGCTGTGG TGATCTCTTA
  R
  AAGTAACGAT GTAACACACA AAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51661340	NES14645678	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	G	A	G	G		G	G	A	G		G
ss136026123	ENSMUSSNP1774411	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321005978	CHEV_3_143407535	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36943752					SNP	G	A	A	A	G	A	G	A	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51661340	NES14645678	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143450332 () rs orientation: forward

Symbol	Name	Function Class
Gm33867	predicted gene, 33867	within coordinates
Gm42705	predicted gene 42705	within coordinates
Rr586558	regulatory region 586558	1184 bp distal
Rr586559	regulatory region 586559	1574 bp distal
Rr586560	regulatory region 586560	651 bp distal