rs36939447 SNP Detail

Summary

• ID
  rs36939447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68493329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTTCAA CAAGCCATAG
  TCTAGACCAC CACGAAGCAC AGGCAGTTGA AGGCCATGCT TGATTTCAGG AGAAATAGAA
  CTAACAGAAC AAGTGAACGA CCTGTTAGGT GAAGCTTCCA GGCACGTGGG GAGCTACAGG
  TATTCCGTGT GTGGGACCTG GAACATACGG AGTGCTACAG GTACACAGTA TGTGGAACCC
  R
  GAACATATGC ATTGGCTCCT GGTCACATCG GCTTCTTAGT TACCTCCCCT GGGCAAGTGC
  CTTGATGTCT ATGCAGAATG CTGTTTATAC TGGCGCTCAC TGTGAAGGCT TCATTATGCT
  CAGAGGGAAG AAAATTGTAA TTTTATTATG AGCTCCTAGT GAAATTGATC AACATTTGTA
  CTTTTTTTAG AGTACAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51542825	NES14685753	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36939447					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51542825	NES14685753	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68493329 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr578033	regulatory region 578033	1807 bp distal
Rr578034	regulatory region 578034	778 bp distal
Rr578035	regulatory region 578035	within coordinates
Rr578036	regulatory region 578036	523 bp proximal
Rr578037	regulatory region 578037	1353 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr899	transcription start site region 899	1855 bp downstream
Tssr29468	transcription start site region 29468	1871 bp downstream
Tssr29469	transcription start site region 29469	1815 bp downstream
Tssr29470	transcription start site region 29470	1789 bp downstream
Tssr29471	transcription start site region 29471	1704 bp downstream
Tssr29472	transcription start site region 29472	1683 bp downstream
Tssr29473	transcription start site region 29473	1653 bp downstream