rs36938505 SNP Detail

Summary

• ID
  rs36938505
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151949622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCGGGAA AATACTCAGA
  GCACTAAGTG AGCATTCTTA CCTTTCCCAT TTCTTGTCTC AGTTGTTCAA ATTCCTGTTT
  CTCCATTTCT AGTTTATGCC TGCGTTCTTC CTCTGTTCGT CGTCTTTCTT CTTCCATTTT
  TTGTCTTAAT AATTGTTCAA AATTAATTTC TAGTTTTCCA GGAGTAAGAG ATTCTTGAGA
  S
  ACTGTTTTAT AAATCTCTGG GGAATCATCA TCTAATACCT ATTTAAAATA AATATTTTTT
  TCAGAATTGT GCATACTAAA AAGTTATTCC TTCTAGACTG GGGTATCTGT GATATGGAGG
  ATAACCATGT ACATCAGTTC TCCATTGAAA TGAACAAAAC ATGCTCCATT TTTATACATT
  GAATCATTTG AATCAGAAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060328	NES13426279	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36938505					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060328	NES13426279	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151949622 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nexn	nexilin			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
Rr587498	regulatory region 587498			1351 bp proximal
Rr587499	regulatory region 587499			1699 bp proximal
Rr587500	regulatory region 587500			1865 bp proximal
Tssr36172	transcription start site region 36172			1166 bp upstream
Tssr36173	transcription start site region 36173			124 bp upstream
Tssr36174	transcription start site region 36174			87 bp upstream
Tssr36175	transcription start site region 36175			within coordinates
Tssr36176	transcription start site region 36176			6 bp downstream
Tssr36177	transcription start site region 36177			22 bp downstream
Tssr36178	transcription start site region 36178			86 bp downstream